Nitrite Reductase (nirK) Gene Sequences — Main Cropping System Experiment (MCSE)
Data in the KBS LTER core database may not be published without written permission of the lead investigator or project director Full terms of use
Gene sequences of the gene encoding nitrite reductase (nirK) were determined in soil samples taken from the Main Cropping System Experiment.
This datatable is part of the Soil Microbial Gene Sequences dataset.
This dataset contains gene sequences extracted from soils of LTER Experiments.
Note
| Experiment: | Main Cropping System Experiment (MCSE) |
| Data available from: | December 2004 to July 2010 |
| Dataset: | KBS082 |
| Datatable ID: | KBS082-001.24 |
| Core Areas | Populations,Disturbance |
| Repository link: | http://doi.org/10.6073/pasta/584815caee76519da84f47c34185236f |
| Related Tables: | |
| Personnel: |
|
| Last Updated | 2023-10-24 |
| Variate | Description | Units |
|---|---|---|
| sample date | date of sample collection | |
| treatment | LTER treatment | |
| replicate | LTER replicate | |
| primer set | primer set used to isolate the sequence | |
| sequencing method | sequencing method used | |
| gene | type of gene | |
| pubmed id | pubmed_id for this gene if any | |
| accession | gene bank accession id if any | |
| name | local lab name of the gene | |
| sequence | sequence |
| Protocols |
|---|
Data Excerpt
| sample_date | treatment | replicate | primer_set | sequencing_method | gene | pubmed_id | accession | name | sequence |
|---|---|---|---|---|---|---|---|---|---|
| 2010-07-02 | DF | 1 | F1aCu and R3Cu | Sanger | nirK | KDAAA07 | ATCATGGTGCTGCCGCGCGATGGGCTCAAGGATGCCGCCGGCAAACCTCTCCACTACGACCGGATCTACTATGTCGGCGAGCAAGACTATTACGTTCCGCGCGATGCGAAGGGCAATTTCAAGACCTACGACACGCACATCGACGCCTTTGCGGACACCATGGACGCGATGCGCAAACTCATCCCTACCCATGTTGTGTTCAACGGCAGGGTGGGAGCCTTGACTGGCAAGGACGCGATGCCCGCAAAGGTGGGCGAGACCGTGTTGATCGTGCACTCCCAGGCCGATCGTGACTCGCGTCCGCATCTGGTCGGCGGACACGGCGACTATGTCTGGGAGACCGGCAAATTCTCAAATCCTCCAATGACCAGTCTCGAGACCTGGTTCATTCGCGGCGGCTCTGCCGGCGCAGCGCTCTACACGTTCCTCCAGCCCGGCATCTACGGCTACGTAAACCACAACCTGATCGAGGC | ||
| 2010-07-02 | DF | 1 | F1aCu and R3Cu | Sanger | nirK | KDAAA09 | ATCATGGTGCTGCCGCGCGACGGGCTCAAGGATGCCGCGGGCAAACCTCTCCACTACGATCGGGTCTACTATGTCGGCGAGCAAGACTTTTACGTTCCGCGCGATGCGAAGGGCAATTTCAAGACCTACGACACGCACATCGACGCCTTTGAGGACACCATGGACACGATGCGCAAACTCATCCCTACCCATGTTGTGTTCAACGGCAGGGTGGGAGCCTTGACTGGCAAGGACGCGATGCCCGCAAAGGTGGGCGAGACCGTGCTGATCGTGCACTCCCAGGTCGACCGTGACTCACGTCCGCATCTGGTCGGCGGACACGGCGACTATGTCTGGGAGACCGGCAAATTCTCAAATCCTCCAATGACCAGTCTCGAGACCTGGTTCATTCGCGGCGGCTCTGCCGGCGCAGCGCTCTACACGTTCCTCCAGCCCGGCATCTATGCCTACGTAAACCACAACCTGATCGAGGC | ||
| 2010-07-02 | DF | 1 | F1aCu and R3Cu | Sanger | nirK | KDAAA12 | ATCATGGTGCTGCCGCGAGACGGGCTCAAGAACGAAAAAGGCGAGCCACTGCGCTATGATCGCATCTACTATGTCGGCGAAAACGAGTTCTACATTCCGCGTGACGAGGCCGGAAACTACAAGACATTTGAGTCATTGGGCGAGAGCTACGCCGATACCCTTGCGACCATGCGCGGCTTGATTCCGACCCATGTCGTCTTTAACGGCAAGGTAGGAGCACTGACCGGCGAAAACGCCATGAAGTCCAAGGTCGGCGAGACGGTCCTGATCGTTCACTCACAGGCTATTCGCGACACGCGACCGCATCTGATCGGTGGTCACGGTGACTATGTCTGGGAAGAAGGGAAATTTGCGAATCCGCCCGCCAAGGACCTTGAGACCTGGTTCATCCGCGGCGGGTCAGCCGGGGCGGCGCTGTATACGTTTCTGCAGCCCGGCATCTATGCCTATGTGAACCACAACCTGATCGAGGC | ||
| 2010-07-02 | DF | 1 | F1aCu and R3Cu | Sanger | nirK | KDAAB08 | ATCATGGTGCTGCCGCGTGATGGCCTCAGGAACGACAAGGGCGAACCGGTCGAGTACGACAGGATCTTCTATATCGGCGAGAACGACTTCTATATCCCGCGTGACGACCAAGGTAACTTCAAGAGCTACGAATCGGCCGGCGATGGCTACGACGACGTCGTCAAGGTGATGCGCGGGCTGATCCCGACGCATGTGGTGTTCAACGGCAAGGTCGGGTCGCTGACCGGCGACAACGCGATGAAAGCGACAGTGGGCGAAACAGTACTGATCGTCCATTCGCAGGCCAACCGCGATACACGGCCGCATCTGATCGGTGGACACGGCGACTATGTCTGGGAACAAGGCAAATTCGCCAATCCGCCTGCCAAGGATCTGGAAACCTGGTTCATCCGTGGTGGCTCGGCCGGCTCGGCGCTCTATACGTTCCTGCAGCCGGGTATCTACGCCTACGTCAACCACAACCTGATCGAGGC | ||
| 2010-07-02 | DF | 1 | F1aCu and R3Cu | Sanger | nirK | KDAAC08 | ATCATGGTGCTGCCGCGCGACGGATTGAAAGACCATCTGGGGCAGCCCGTCAGCTATGACCGCATATACTATATCGGCGAGACTGACTTTTACATCCCGAAGGGCAAGGACGGAGCCTATATGCGCTTTGCCGATGCCGGGGAAAGCTACTCGGACGTGCTCGAAGTGATGAACGGGCTGATCCCGTCGCATGTGGTATTCAACGGCAAGGTGGGTGCCCTGACTGGCGACAATGCCCTGACAGCCGATCAAGGCGAGACTGTGCTCTTCGTCCACAGCCAGGCCAACCGCGACAGCCGCCCCCACCTGATCGGTGGGCATGGCGATCTGGTCTGGGAGGCGGGCAAGTTCAATAACGTGCCGGATCGCGATCTGGAAACCTGGTTCATCCGGGGCGGCTCGGCGGGCGCGGCGCTTTATACGTTCCTGCAACCAGGCGTCTATGCCTACGTCAACCACAATCTGATCGAGGC |