Nitrite Reductase (nirK) Gene Sequences

Gene sequences of the gene encoding nitrite reductase (nirK) were determined in soil samples taken from the Main Cropping System Experiment.

This datatable is part of the Soil Microbial Gene Sequences dataset. Gene sequences extracted from soils.

Note

Experiment: Main Cropping System Experiment (MCSE)
Data available from: December 2004 to July 2010
Dataset: KBS082
Datatable ID: KBS082-001.18
Core Areas Populations,Disturbance
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Last Updated 2017-10-24
Status
  • Completed
Variate Description Units
sample date date of sample collection
treatment LTER treatment
replicate LTER replicate
primer set primer set used to isolate the sequence
sequencing method sequencing method used
gene type of gene
pubmed id pubmed_id for this gene if any
accession gene bank accession id if any
name local lab name of the gene
sequence sequence

Data Excerpt

sample_date treatment replicate primer_set sequencing_method gene pubmed_id accession name sequence
2008-12-12 DF 1 nirK-q1Fm and nirK-q1Rm 454 nirK BM7ZS TATGTCTGGGAGACCGGCAAGTTCTCGAATCCTCCGGAGATCAATCTGGAGACCTGGTTTATCCGCGGCGGCTCCGCGGGCGCCGCGCTCTACACCTTCCTCGAGCCCGGCATCTACGGCTACGTA
2008-12-12 DF 1 F1aCu and R3Cu Sanger nirK KDAAA07 ATCATGGTGCTGCCGCGCGAAGGCCTCACCGACGGCAAGGGCAAATCCCTTCGCTATGACAAGGTCGTCTATATCGGCGAGCAGGACCTCTACGTGCCGAAGGACGAGAAGGGCAAATACAAGGAATACAATTCTCCGGGCGAATCCTATACCGACACCGTGGAGGTGATGCGCAAGCTGACGCCGACCCACGTCGTGTTCAACGGCAAGGTCGGCGTATTGACCGGCAAGAACGTGCTCACCTCCAAGGTCGGCGAAACCGTGCTGATCGTGCATTCGCAGGCCAACCGCGACAGCCGCCCGCATCTGATCGGCGGCCATGGCGACTATGTCTGGGAGACCGGCAAGTTCTCCAATACGCCGGAGACGGGACTCGAGACCTGGTTCATCCGCGGCGGCTCAGCGGGAGCAGCGCTCTACAAGTTCCTCGAACCCGGCATCTACGCCTACGTCAACCACAACCTGATCGAGGC
2008-12-12 DF 1 F1aCu and R3Cu Sanger nirK KDAAA08 ATCATGGTGCTGCCGCGCGACGGGCTCAAGGATGCCGCGGGCAAACCTCTCCACTACGATCGGGTCTACTATGTCGGCGAGCAAGACTTTTACGTTCCGCGCGATGCGAAGGGCAATTTCAAGACCTACGACACGCACATCGACGCCTTTGAGGACACCATGGACACGATGCGCAAACTCATCCCTACCCATGTTGTGTTCAACGGCAGGGTGGGAGCCTTGACTGGCAAGGACGCGATGCCCGCAAAGGTGGGCGAGACCGTGCTGATCGTGCACTCCCAGGTCGACCGTGACTCACGTCCGCATCTGGTCGGCGGACACGGCGACTATGTCTGGGAGACCGGCAAATTCTCAAATCCTCCAATGACCAGTCTCGAGACCTGGTTCATTCGCGGCGGCTCTGCCGGCGCAGCGCTCTACACGTTCCTCCAGCCCGGCATCTATGCCTACGTAAACCACAACCTGATCGAGGC
2008-12-12 DF 1 F1aCu and R3Cu Sanger nirK KDAAA09 ATCATGGTGCTGCCGCGCGACGGGCTCAAGGATGCCAAAGGCAAACCTCTCCACTACGACCGAGTCTACTATCTCGGCGAGCAAGACTTTTACGTTCCGCGCGATGCGAAGGGCAAATTCAAGACCTACGACACACACGTCGACGCCTTTGAGGACACCAGGGACGCAATGCGCAAACTCATCCCCACCCACGTCGTGTTCAATGGCAGAGTGGGAGCCTTGACTGGCCAAAATGCAATGCCCGCAAAGGTGGGCGAGACCGTGCTGATCGTACACTCCCAAGCCGATCGGGACTCGCGCCCGCATCTGGTCGGCGGACACGGCGACTATGTCTGGGAGACCGGCAAGTTCTCGAATCCTCCTGAGACAAATCTGGAGACCTGGTTCATCCGCGGCGGTTCAGCGGGTGCAGCGCTCTACACGTTCCTCCAGCCCGGCGTGTACGCCTACGTGAACCACAACCTGATCGAGGC
2008-12-12 DF 1 F1aCu and R3Cu Sanger nirK KDAAA10 ATCATGGTGCTGCCGCGCGACGGGCTCAAGGATGCCGCGGGCAAACCTCTCCACTACGATCGGGTCTACTATGTCGGCGAGCAAGACTTTTACGTTCCGCGCGATGCGAAGGGCAATTTCAAGACCTACGACACGCACATCGACGCCTTTGAGGACACCATGGACACGATGCGCAAACTCATCCCTACCCATGTTGTGTTCAACGGCAGGGTGGGAGCCTTGACTGGCAAGGACGCGATGCCCGCAAAGGTGGGCGAGACCGTGCTGATCGTGCACTCCCAGGTCGACCGTGACTCACGTCCGCATCTGGTCGGCGGACACGGCGACTATGTCTGGGAGACCGGCAAATTCTCAAATCCTCCAATGACCAGTCTCGAGACCTGGTTCATTCGCGGCGGCTCTGCCGGCGCAGCGCTCTACACGTTCCTCCAGCCCGGCATCTATGCCTACGTAAACCACAACCTGATCGAGGC
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